scycle uses the scanpy and anndata frameworks in Python and extends their functionality to calculate cell-cycle pseudotimes and assigns cell cycle phase for each cell in a dataset.
To install, use pip:
pip install git+https://github.com/csgroen/scycle.git#egg=scycle
Initial tutorials are available here
Warning: This package is still in a pre-release state: we regularly update the source code, and inconsistencies can occur. Please do not hesitate to open an issue to notify us about any suprising behavior.