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Currently, lists are sorted in alphabetical order. This has the following surprising (for me, at least) consequences:
array is sorted before base
all comments in the list gets moved to the very beginning
empty lines are removed
Therefore, I do not see a way to maintain my dependencies in groups, where each group contributes to a certain functionality of my package. I propose to change the behaviour to treat comments and/or empty lines as group separators, and only sort within the groups.
As a minor point, I do think base should always appear first in the dependency list, so maybe it can be considered as a special case when sorting the dependencies. However, I understand not everyone will agree with this ordering, and I am all satisfied if at least I can use grouping to force the ordering.