TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
A snakemake workflow based on the obitools suite of programs, that analyzes DNA metabarcoding data.
A short pipeline for metabarcoding analyses and data visualisation
Written by Emily Curd ([email protected]), Jesse Gomer ([email protected]), Gaurav Kandlikar ([email protected]), Zack Gold ([email protected]), Max Ogden ([email protected]), Lenore Pipes ([email protected])and Baochen Shi ([email protected]). Assistance was provided by Rachel Meyer ([email protected]).
Supporting codes for Manu et al., Ecological Indicators (2023). Deep sequencing of extracellular eDNA enables total biodiversity assessment of ecosystems
Ballini & Staffoni et al. (submitted to Hydrobiologia) workflow
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