WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
GeneWalk identifies relevant gene functions for a biological context using network representation learning
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
Flexible analysis of high-content CRISPR screening
✂️ Pooled CRISPR screen optimization tool
Examples to get started with IBM Functional Genomics Platform
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
TnSeq data processing workflow
A system for the integration and analysis of heterogeneous functional genomics data.
Genome-wide extraction of real-valued signals hidden in noisy multisample HTS data
Documentation site for the Geneweaver project.
A client library for the integration and analysis of heterogeneous functional genomics data.
Developed by Qiaoshan Lin in Yaowu Yuan Lab
In-house scripts for data processing and analysis
The core library for GeneWeaver projects.
The GeneWeaver database interaction code.
Functional Genomics Final Project - UC Berkeley
A curated list of regulatory genomics papers and resources.
ShiftSCAN systematically detects chimeric and non-chimeric peptide sources by analyzing multi-frame translations in nucleotide sequences.
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