add ci tests

.github/workflows/test.yml

@@ -0,0 +1,29 @@
+name: Full spikeinterface tests
+
+on:
+  pull_request:
+    branches: [main]
+    types: [synchronize, opened, reopened, ready_for_review]
+
+jobs:
+  build-and-test:
+    name: Test on (${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        # "macos-latest", "windows-latest"
+        os: ["ubuntu-latest", ]
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          python-version: 3.8
+      - uses: eWaterCycle/setup-singularity@v7
+        with:
+          singularity-version: 3.8.3
+      - name: Install dependencies
+        run: |
+          pip install spikeinterface[full] spython pytest tridesclous
+      - name: Test singularity
+        run: |
+          pytest -v

tests/test_singularity_containers.py

@@ -0,0 +1,43 @@
+import spikeinterface.sorters as ss
+from spikeinterface.core.testing_tools import generate_recording
+
+recording = generate_recording(
+    num_channels=32,
+    sampling_frequency=30000.,  # in Hz
+    durations=[120],
+    set_probe=True,
+    ndim=2,
+)
+#recording = toy_example(num_segments=1, num_channels=32, duration=120)[0]
+recording2 = recording.save(folder="test_recording")
+# recording2 = si.load_extractor("test_recording11")
+
+
+def test_spyking_circus():
+
+    ss.run_spykingcircus(
+        recording2,
+        output_folder="spyking_circus",
+        singularity_image="spikeinterface/spyking-circus-base:1.1.0",
+        verbose=True
+    )
+
+
+def test_tridecluos():
+
+    ss.run_tridesclous(
+        recording2,
+        output_folder="tridesclous",
+        singularity_image="spikeinterface/tridesclous-base:1.6.5",
+        verbose=True
+    )
+
+
+def test_ironclust():
+
+    ss.run_ironclust(
+        recording2,
+        output_folder="ironclust",
+        singularity_image="spikeinterface/ironclust-compiled-base:5.9.8",
+        verbose=True
+    )