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Designing Templates

Status: Open.

#186 In czbiohub-sf/biahub;

· srivarra opened on Nov 26, 2025

<code>biahub estimate-stitch</code> and <code>biahub stitch</code> should allow for independent tile locations per timepoint

Status: Open.

#185 In czbiohub-sf/biahub;

· ieivanov opened on Nov 26, 2025

Using phase cross-correlation with <code>biahub estimate-stitch</code> only works if FOVs are named XXXYYY

Status: Open.

#184 In czbiohub-sf/biahub;

· ieivanov opened on Nov 26, 2025

<code>biahub estimate-stitch</code> requires MM summary metadata

Status: Open.

#183 In czbiohub-sf/biahub;

· ieivanov opened on Nov 26, 2025

biahub and waveorder reconstructions should carry previous zarr metadata fields

Status: Open.

#182 In czbiohub-sf/biahub;

· ieivanov opened on Nov 26, 2025

patch_size argument in <code>biahub characterize-psf</code> is not optional as intented

Status: Open.

#181 In czbiohub-sf/biahub;

· ieivanov opened on Nov 25, 2025

Add <code>biahub convert</code>

Status: Open.

#177 In czbiohub-sf/biahub;

· srivarra opened on Oct 28, 2025

Tracking statistics

Status: Open.

#166 In czbiohub-sf/biahub;

· edyoshikun opened on Oct 1, 2025

installing biahub remove ome-zarr napari pluging

Status: Open.

#163 In czbiohub-sf/biahub;

· tayllatheodoro opened on Sep 25, 2025

Estimated Crop Smaller than Visual Overlap

bugSomething isn't workingSomething isn't working

Status: Open.

#160 In czbiohub-sf/biahub;

· tayllatheodoro opened on Sep 23, 2025

Pipeline: Image-based screens (snapshots) with organelle box of A549 and iPSCs

Status: Open.

#159 In czbiohub-sf/biahub;

· ieivanov opened on Sep 19, 2025

Pipeline: Immune dynamics across zebrafish

Status: Open.

#158 In czbiohub-sf/biahub;

· ieivanov opened on Sep 19, 2025