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26 changes: 0 additions & 26 deletions easybuild/easyconfigs/a/ACT/ACT-18.0.2-Java-11.eb

This file was deleted.

33 changes: 0 additions & 33 deletions easybuild/easyconfigs/a/ACT/ACT-18.0.3-Java-11.eb

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31 changes: 31 additions & 0 deletions easybuild/easyconfigs/a/Artemis/Artemis-18.0.2-Java-11.eb
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easyblock = 'PackedBinary'

name = 'Artemis'
version = '18.0.2'
versionsuffix = '-Java-%(javaver)s'

homepage = 'http://sanger-pathogens.github.io/Artemis/'
description = """The Artemis Software is a set of software tools for genome browsing and annotation.
It includes: Artemis, Artemis Comparison Tool (ACT), BamView and DNAPlotter."""

toolchain = SYSTEM

source_urls = ['https://github.com/sanger-pathogens/%(name)s/releases/download/v%(version)s/']
sources = ['%(namelower)s-unix-release-%(version)s.tar.gz']
checksums = ['1cb9f36af4c96ae3bde4fa849e01e66c830d4b968867e7842abbab9195b57e60']

dependencies = [('Java', '11')]

sanity_check_paths = {
'files': ['act', 'art', 'bamview', 'dnaplotter'],
'dirs': [],
}

# act -help returns exit-code 1, but it is valid working executable.
# Workaround is to grep phrase from help command output
# https://github.com/sanger-pathogens/Artemis/issues/296
sanity_check_commands = [
"act -help | grep -q 'EXAMPLES'"
]

moduleclass = 'bio'
31 changes: 31 additions & 0 deletions easybuild/easyconfigs/a/Artemis/Artemis-18.0.3-Java-11.eb
Original file line number Diff line number Diff line change
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easyblock = 'PackedBinary'

name = 'Artemis'
version = '18.0.3'
versionsuffix = '-Java-%(javaver)s'

homepage = 'http://sanger-pathogens.github.io/Artemis/'
description = """The Artemis Software is a set of software tools for genome browsing and annotation.
It includes: Artemis, Artemis Comparison Tool (ACT), BamView and DNAPlotter."""

toolchain = SYSTEM

source_urls = ['https://github.com/sanger-pathogens/%(name)s/releases/download/v%(version)s/']
sources = ['%(namelower)s-unix-release-%(version)s.tar.gz']
checksums = ['2603e6daf123c866817fcc22d4577244787349913cebc7acecbcc2e059a8e15c']

dependencies = [('Java', '11')]

sanity_check_paths = {
'files': ['act', 'art', 'bamview', 'dnaplotter'],
'dirs': [],
}

# act -help returns exit-code 1, but it is valid working executable.
# Workaround is to grep phrase from help command output
# https://github.com/sanger-pathogens/Artemis/issues/296
sanity_check_commands = [
"act -help | grep -q 'EXAMPLES'"
]

moduleclass = 'bio'