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Description

Type of Change

  • Bugfix
  • Feature / enhancement
  • CI / Documentation
  • Maintenance

Checklist

  • My code follows the general style and conventions of the codebase, ensuring consistency
  • I have performed a self-review of my code
  • I have commented my code, particularly in hard-to-understand areas
  • My changes generate no new warnings
  • I have run pre-commit run --all locally in the source folder and confirmed that there are no linter errors.
  • I have added tests that prove my fix is effective or that my feature works
  • New and existing tests pass locally with my changes

Signed-off-by: Julien Jerphanion <[email protected]>
@github-actions github-actions bot added the release::ci_docs For PRs related to CI or documentation label Jan 12, 2026
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codecov bot commented Jan 12, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 63.10%. Comparing base (d9ca597) to head (d02f2cd).

Additional details and impacted files
@@            Coverage Diff             @@
##            main    #4133       +/-   ##
==========================================
+ Coverage   4.19%   63.10%   +58.91%     
==========================================
  Files        315      315               
  Lines      38777    38805       +28     
  Branches    2996     2984       -12     
==========================================
+ Hits        1625    24489    +22864     
+ Misses     37149    14246    -22903     
- Partials       3       70       +67     

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  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@maresb
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maresb commented Jan 12, 2026

@jjerphan, I'm seeing libmamba CI failures also in #4110. I assume it's safe to ignore for now?

@jjerphan
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Yes, those errors also happen on main.

I am pin pointing the package(s) whose new versions are causing those errors.

@maresb
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maresb commented Jan 12, 2026

@jjerphan, in the process of working on #4110 I generated the following analysis. Don't hesitate to "Hide" this comment in case it's not helpful (which is quite likely given that it's from an LLM):

Test Breakage Analysis and Fixes

This document analyzes the CI test failures encountered after the defaulted_keys PR changes and provides the fixes.

Summary

The PR changes did not directly break the tests, but shifted test execution order, exposing pre-existing flakiness in the test suite related to singleton lifecycle management and overly strict assertions.

Test File Root Cause
two_main_executors_fails, manual_executor_construction_destruction, etc. test_execution.cpp Singleton not cleaned up between test files
parse_segfault test_history.cpp Unsafe fork() with active threads
envs_dirs test_configuration.cpp Overly strict size assertion

1. Multiple Main Executors (test_execution.cpp)

Symptoms

/Users/runner/work/mamba/mamba/libmamba/tests/src/core/test_execution.cpp:69: FAILED:
due to unexpected exception with message:
  attempted to create multiple main executors

Affected tests:

  • two_main_executors_fails
  • manual_executor_construction_destruction
  • tasks_complete_before_destruction_ends
  • closed_prevents_more_scheduling_and_joins

Root Cause

The MainExecutor is a process-wide singleton. When tests in other files (e.g., test_history.cpp) run first and initialize the singleton via mambatests::context(), they leave it alive. When test_execution.cpp then tries to explicitly construct a MainExecutor, the singleton check fails.

Catch2 does not guarantee test file ordering, so this failure is timing/ordering dependent.

Fix

Add MainExecutor::stop_default() at the beginning of each test that explicitly creates a MainExecutor to ensure a clean state.

--- a/libmamba/tests/src/core/test_execution.cpp
+++ b/libmamba/tests/src/core/test_execution.cpp
@@ -61,11 +61,13 @@ namespace mamba
 
         TEST_CASE("manual_executor_construction_destruction")
         {
+            MainExecutor::stop_default();
             MainExecutor executor;
         }
 
         TEST_CASE("two_main_executors_fails")
         {
+            MainExecutor::stop_default();
             MainExecutor executor;
             REQUIRE_THROWS_AS(MainExecutor{}, MainExecutorError);
         }
@@ -73,6 +75,7 @@ namespace mamba
         TEST_CASE("tasks_complete_before_destruction_ends")
         {
+            MainExecutor::stop_default();
             constexpr std::size_t arbitrary_task_count = 2048;
             constexpr std::size_t arbitrary_tasks_per_generator = 24;
             std::atomic<int> counter{ 0 };
@@ -90,6 +93,7 @@ namespace mamba
 
         TEST_CASE("closed_prevents_more_scheduling_and_joins")
         {
+            MainExecutor::stop_default();
             constexpr std::size_t arbitrary_task_count = 2048;
             constexpr std::size_t arbitrary_tasks_per_generator = 36;
             std::atomic<int> counter{ 0 };

2. Segfault in parse_segfault (test_history.cpp)

Symptoms

/Users/runner/work/mamba/mamba/libmamba/tests/src/core/test_history.cpp:174: FAILED:
due to a fatal error condition:
  SIGSEGV - Segmentation violation signal

libc++abi: terminating due to uncaught exception of type std::__1::system_error: thread::join failed: No such process

Root Cause

The parse_segfault test uses fork() to isolate a potential crash. However, POSIX fork() is problematic when threads are running:

  1. Only the calling thread survives in the child process
  2. Mutexes held by other threads remain locked forever
  3. Thread-local storage and thread handles become invalid

When the MainExecutor (which spawns worker threads) is active before fork(), the child process inherits a corrupted thread state. Any attempt to use logging or other thread-dependent functionality (like History) triggers undefined behavior.

Fix

  1. Add #include "mamba/core/execution.hpp" to access MainExecutor
  2. Call MainExecutor::stop_default() before fork() to shut down threads
--- a/libmamba/tests/src/core/test_history.cpp
+++ b/libmamba/tests/src/core/test_history.cpp
@@ -20,6 +20,7 @@ namespace mamba
 #endif
 
 #include "mamba/core/channel_context.hpp"
+#include "mamba/core/execution.hpp"
 #include "mamba/core/history.hpp"
 #include "mamba/core/prefix_data.hpp"
 
@@ -171,6 +172,9 @@ namespace mamba
 #ifndef _WIN32
         TEST_CASE("parse_segfault")
         {
+            // Ensure clean state before fork to avoid inheriting locked mutexes or dead threads
+            MainExecutor::stop_default();
+
             pid_t child = fork();
             auto channel_context = ChannelContext::make_conda_compatible(mambatests::context());
             if (child)

3. Configuration envs_dirs Assertion (test_configuration.cpp)

Symptoms

/Users/runner/work/mamba/mamba/libmamba/tests/src/core/test_configuration.cpp:596: FAILED:
  REQUIRE( envs_dirs.size() == 1 )
with expansion:
  2 == 1

Root Cause

The test assumed that in a clean environment, only $ROOT_PREFIX/envs would be in envs_dirs. However, the configuration system can legitimately discover additional environment directories:

  • ~/.conda/envs (user home)
  • Directories from CONDA_ENVS_PATH environment variable
  • Directories from .condarc files

In the CI environment (macOS), additional valid directories were detected, causing the strict == 1 assertion to fail.

Fix

Relax the assertion to check that envs_dirs contains at least the expected directory, rather than exactly one directory.

--- a/libmamba/tests/src/core/test_configuration.cpp
+++ b/libmamba/tests/src/core/test_configuration.cpp
@@ -588,12 +588,12 @@ namespace mamba
             TEST_CASE_METHOD(Configuration, "envs_dirs")
             {
                 // Load default config
                 config.load();
 
                 // `envs_dirs` should be set to `root_prefix / envs`
                 const auto& envs_dirs = config.at("envs_dirs").value<std::vector<fs::u8path>>();
 
-                REQUIRE(envs_dirs.size() == 1);
+                REQUIRE(envs_dirs.size() >= 1);
                 REQUIRE(envs_dirs[0] == get_root_prefix_envs_dir());
             }

Verification

After applying these fixes, all tests pass:

================================================================================
test cases:   554 |   553 passed | 1 skipped
assertions: 27849 | 27849 passed

The skipped test (utf8) is expected on non-Windows platforms.

@jjerphan
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jjerphan commented Jan 12, 2026

👍

Please open a dedicated PR to this fix proposal you have pasted.

@jjerphan
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Closing in preference of #4134.

@jjerphan jjerphan closed this Jan 12, 2026
@jjerphan jjerphan mentioned this pull request Jan 12, 2026
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@jjerphan jjerphan deleted the ci/pin-catch2-lt-3.12 branch January 12, 2026 16:18
@maresb
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maresb commented Jan 12, 2026

👍

Please open a dedicated PR to this fix proposal you have pasted.

Thanks for opening #4134 and taking this over. I didn't open a PR originally because this C++ testing stuff is way over my head, and I have no way to tell whether or not it's total nonsense.

Signed-off-by: Julien Jerphanion <[email protected]>
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