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Ancient DNA mode: Add pyDamage results to bin_summary.tsv

enhancementNew feature or requestNew feature or request

Status: Open.

#833 In nf-core/mag;

· jfy133 opened on Jun 22, 2025

Use hostile for host read removal

enhancementNew feature or requestNew feature or request

Status: Open.

#822 In nf-core/mag;

· dialvarezs opened on Jun 2, 2025

Refactor pipeline to only refer to params in entry workflow

enhancementNew feature or requestNew feature or request

Status: Open.

#821 In nf-core/mag;

· prototaxites opened on Jun 2, 2025

Standardise pre-processing parameter flags between long and short reads

enhancementNew feature or requestNew feature or request

Status: Open.

#806 In nf-core/mag;

· prototaxites opened on May 14, 2025

Add fairy for fast co-coverage estimation

enhancementNew feature or requestNew feature or request

Status: Open.

#796 In nf-core/mag;

· prototaxites opened on May 8, 2025

QUAST_BINS can be very slow / Reconfigure BIN_SUMMARY table

enhancementNew feature or requestNew feature or request

Status: Open.

#789 In nf-core/mag;

· prototaxites opened on Apr 9, 2025

Remove unusued local modules

enhancementNew feature or requestNew feature or request

Status: Open.

#757 In nf-core/mag;

· jfy133 opened on Jan 30, 2025

Replace QUAST custom modules with official nf-core ones

enhancementNew feature or requestNew feature or request

Status: Open.

#748 In nf-core/mag;

· amizeranschi opened on Jan 20, 2025

Compress FASTA files with contigs and scaffolds using bgzip instead of gzip, to enable file indexing

enhancementNew feature or requestNew feature or request

Status: Open.

#746 In nf-core/mag;

· amizeranschi opened on Jan 19, 2025

Add new features and Improvement to nf-core/mag: Trimmomatic, contigs param for binning, new concoct default params

enhancementNew feature or requestNew feature or request

Status: Open.

#744 In nf-core/mag;

· Pranjal-Bioinfo opened on Jan 16, 2025

Ensure unique contig names across assemblies, for chaining pipeline with magmap

enhancementNew feature or requestNew feature or request

Status: Open.

#742 In nf-core/mag;

· amizeranschi opened on Jan 6, 2025

Create a summary report

enhancementNew feature or requestNew feature or request

Status: Open.

#728 In nf-core/mag;

· dialvarezs opened on Dec 10, 2024