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new subworkflow: fastq_host_decontamination

new subworkflow

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Task

#9246 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new subworkflow: fastq_remove_adapters_and_merge

new subworkflow

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Task

#9245 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new subworkflow: fastq_preprocess

new subworkflow

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Task

#9244 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new subworkflow: fastq_generate_statistics

new subworkflow

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Task

#9243 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new module: DEACON/FILTER

new moduleAdding a new moduleAdding a new module

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Task

#9242 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new module: SEQFU/CHECK

new moduleAdding a new moduleAdding a new module

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Task

#9241 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new module: gatk4/concordance

new moduleAdding a new moduleAdding a new module

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

#9240 In nf-core/modules;

· kubranarci opened on Oct 24, 2025

new subworkflow: FASTQ_SHORTREADS_PREPROCESS_QC

new subworkflow

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

Enhancement

#9239 In nf-core/modules;

· vagkaratzas opened on Oct 24, 2025

new module: DEVIDER

new moduleAdding a new moduleAdding a new module

Status: Open.

#9231 In nf-core/modules;

· Krannich479 opened on Oct 23, 2025

parabricks/fq2bam needs the fasta in the same folder as the BWAIndex

bugSomething isn't workingSomething isn't working

Status: Open.

#9230 In nf-core/modules;

· famosab opened on Oct 23, 2025

new module: BCFTOOLS/PLUGINVCF2TABLE

new moduleAdding a new moduleAdding a new module

Status: Open.

#9224 In nf-core/modules;

· georgiakes opened on Oct 22, 2025

update module: PROPR/PROPD

update module

Status: Open.

#9222 In nf-core/modules;

· suzannejin opened on Oct 21, 2025