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Deactivate the publishing of unmapped bam files

bugSomething isn't workingSomething isn't working

Status: Open.

#644 In nf-core/taxprofiler;

· sofstam opened on Aug 29, 2025

Providing a combined report for estimated counts table for Metaphlan

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#638 In nf-core/taxprofiler;

· apalleja opened on Aug 26, 2025

SAM files (*.sam.bz2) as optional output of MetaPhlAn for subsequent StrainPhlAn analysis

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#634 In nf-core/taxprofiler;

· mr2raccoon opened on Aug 20, 2025

New profiler: singleM

Status: Open.

#626 In nf-core/taxprofiler;

· jfy133 opened on Jul 18, 2025

Update nf-core modules to latest version

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#620 In nf-core/taxprofiler;

· sofstam opened on Jul 7, 2025

Add snapshot for default pipeline nf-test

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#618 In nf-core/taxprofiler;

· sofstam opened on Jun 11, 2025

Taxprofiler profiles/subworkflows have various Nextflow syntax errors according to new extension rules

bugSomething isn't workingSomething isn't working

Status: Open.

#606 In nf-core/taxprofiler;

· jfy133 opened on Apr 30, 2025

Provide custom script for merging MetaPhlAn tables for better sample name handling

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#574 In nf-core/taxprofiler;

· alexhbnr opened on Jan 30, 2025

Add option for BBTools Clumpify optical deduplication

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#547 In nf-core/taxprofiler;

· funnell opened on Oct 22, 2024

Create a samplesheet for mag

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#542 In nf-core/taxprofiler;

· sofstam opened on Oct 10, 2024

Create samplesheets for differentialabundance

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#541 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Oct 10, 2024

New feature: melon - long reads profiler

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#517 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Aug 30, 2024

· 

1.3.0 - Crazy Corgi