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[FIX,WIP] Setting inputs.ignore_exception #2412

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Merged
merged 2 commits into from
Jan 27, 2018
Merged

[FIX,WIP] Setting inputs.ignore_exception #2412

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e722da7
fix setting inputs.ignore_exception
oesteban Jan 27, 2018
ba378cb
remove a leftover inputs.ignore_exception
oesteban Jan 27, 2018
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8 changes: 4 additions & 4 deletions doc/users/saving_workflows.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -73,27 +73,27 @@ This will create a file "outputtestsave.py" with the following content:
return out

testfunc.inputs.function_str = getsource(testfunc_1)
testfunc.inputs.ignore_exception = False
testfunc.ignore_exception = False
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.interface?

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Yup, and I think that the class attribute does not exist either.

testfunc.inputs.in1 = '-sub'
testsave.connect(inode, "a", testfunc, "in1")
# Node: testsave.bet2
bet2 = MapNode(BET(), iterfield=['infile'], name="bet2")
bet2.iterables = ('frac', [0.4, 0.5])
bet2.interface.ignore_exception = False
bet2.inputs.environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
bet2.inputs.ignore_exception = False
bet2.inputs.output_type = 'NIFTI_GZ'
bet2.terminal_output = 'stream'
# Node: testsave.bet
bet = Node(BET(), name="bet")
bet.iterables = ('frac', [0.3, 0.4])
bet.interface.ignore_exception = False
bet.inputs.environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
bet.inputs.ignore_exception = False
bet.inputs.output_type = 'NIFTI_GZ'
bet.terminal_output = 'stream'
# Node: testsave.maths
maths = Node(ImageMaths(), name="maths")
maths.interface.ignore_exception = False
maths.inputs.environ = {'FSLOUTPUTTYPE': 'NIFTI_GZ'}
maths.inputs.ignore_exception = False
maths.inputs.output_type = 'NIFTI_GZ'
maths.terminal_output = 'stream'
testsave.connect(bet2, ('mask_file', func), maths, "in_file2")
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4 changes: 2 additions & 2 deletions nipype/workflows/smri/ants/ANTSBuildTemplate.py
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Expand Up @@ -183,7 +183,7 @@ def ANTSTemplateBuildSingleIterationWF(iterationPhasePrefix=''):
output_names=['out']),
run_without_submitting=True,
name='MakeTransformsLists')
MakeTransformsLists.inputs.ignore_exception = True
MakeTransformsLists.interface.ignore_exception = True
TemplateBuildSingleIterationWF.connect(
BeginANTS, 'warp_transform', MakeTransformsLists, 'warpTransformList')
TemplateBuildSingleIterationWF.connect(BeginANTS, 'affine_transform',
Expand Down Expand Up @@ -263,7 +263,7 @@ def ANTSTemplateBuildSingleIterationWF(iterationPhasePrefix=''):
output_names=['TransformListWithGradientWarps']),
run_without_submitting=True,
name='MakeTransformListWithGradientWarps')
ApplyInvAverageAndFourTimesGradientStepWarpImage.inputs.ignore_exception = True
ApplyInvAverageAndFourTimesGradientStepWarpImage.interface.ignore_exception = True

TemplateBuildSingleIterationWF.connect(
AvgAffineTransform, 'affine_transform',
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2 changes: 1 addition & 1 deletion nipype/workflows/smri/ants/antsRegistrationBuildTemplate.py
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Expand Up @@ -360,7 +360,7 @@ def antsRegistrationTemplateBuildSingleIterationWF(iterationPhasePrefix=''):
output_names=['TransformListWithGradientWarps']),
run_without_submitting=True,
name='99_MakeTransformListWithGradientWarps')
ApplyInvAverageAndFourTimesGradientStepWarpImage.inputs.ignore_exception = True
ApplyInvAverageAndFourTimesGradientStepWarpImage.interface.ignore_exception = True

TemplateBuildSingleIterationWF.connect(
AvgAffineTransform, 'affine_transform',
Expand Down