Add a converter from PDB to Zarr to the DatasetFactory

[zhu0619]

Changelogs

• Added PDBConverter which is able to convert pdb files to zarr file
• Added ARRAY_TO_PDB which is able to load pdb from zarr file
• Allow add_from_file to handle multiple files.
• Added simple tutorial for creating dataset from pdb file.

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Checklist:

• Was this PR discussed in an issue? It is recommended to first discuss a new feature into a GitHub issue before opening a PR.
• Add tests to cover the fixed bug(s) or the newly introduced feature(s) (if appropriate).
• Update the API documentation if a new function is added, or an existing one is deleted.
• Write concise and explanatory changelogs above.
• If possible, assign one of the following labels to the PR: feature, fix, chore, documentation or test (or ask a maintainer to do it for you).

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Issue #172

During the conversion, only the most essential structural information is retained, including 3D coordinates, chain ID, residue ID, insertion code, residue name, heteroatom indicator, atom name, element, atom ID, B-factor, occupancy, and charge.

[zhu0619]

Currently, fastpdb can only be installed via pip. I created an issue in their repository to request support for conda installation.

[cwognum]

Thanks @zhu0619 !

I know it took some searching, but I think the solution you came up using fastpdb with is very polished! 💅

I did have some comments. In addition to these comments, would you also mind adding test cases?

[cwognum]

FYI - We'll hold of on merging this to give #121 priority!