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These functions convert proteomics tables coming from the DIA-NN software to an AnnData object for further usage with spatialdata.

Note: This is a work in progress; initial testing is complete, but further validation is needed.

minhtien-trinh and others added 2 commits November 5, 2024 15:57
These functions convert proteomics tables coming from the DIA-NN software to an AnnData object for further usage with spatialdata.
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codecov-commenter commented Nov 5, 2024

Codecov Report

❌ Patch coverage is 0% with 86 lines in your changes missing coverage. Please review.
✅ Project coverage is 34.49%. Comparing base (47d651d) to head (ffd3106).
⚠️ Report is 259 commits behind head on main.

Files with missing lines Patch % Lines
src/spatialdata_io/experimental/diann.py 0.00% 86 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (47d651d) and HEAD (ffd3106). Click for more details.

HEAD has 1 upload less than BASE
Flag BASE (47d651d) HEAD (ffd3106)
2 1
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #233      +/-   ##
==========================================
- Coverage   43.76%   34.49%   -9.28%     
==========================================
  Files          23       23              
  Lines        2367     2235     -132     
==========================================
- Hits         1036      771     -265     
- Misses       1331     1464     +133     
Files with missing lines Coverage Δ
src/spatialdata_io/experimental/diann.py 0.00% <0.00%> (ø)

... and 6 files with indirect coverage changes

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2 participants