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Closed
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michaelosthege opened this issue Jan 26, 2022 · 1 comment · Fixed by #5736
Closed
2 tasks

Unpin numpydoc 1.2 upper version limit #5401

michaelosthege opened this issue Jan 26, 2022 · 1 comment · Fixed by #5736

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@michaelosthege
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⚠ This affects both main and v3 branches. ⚠

The numpydoc 1.2 release from 2022-01-24 broke docs build.

To unblock several PRs the easiest action right now is pinning numpydoc <1.2.

To resolve this issue

  • Unpin on main
  • Unpin on v3
michaelosthege added a commit that referenced this issue Jan 26, 2022
michaelosthege added a commit that referenced this issue Jan 26, 2022
michaelosthege added a commit that referenced this issue Jan 26, 2022
michaelosthege added a commit that referenced this issue Jan 27, 2022
OriolAbril pushed a commit that referenced this issue Feb 4, 2022
* Backwards-compatible rename `Lognormal`→`LogNormal`

* Warn about removal of trace-continuation support

* Fixup lognormal rename

* More fixup

* Fix docstring section underlines

* Temporarily pin upper numpydoc version

Tracking issue #5401

* Temporarily pin upper numpydoc version

Tracking issue #5401
@michaelosthege
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Numpydoc 1.2.1 was released.

The time has come to unpin.

michaelosthege added a commit that referenced this issue May 1, 2022
michaelosthege added a commit that referenced this issue May 1, 2022
fonnesbeck added a commit that referenced this issue May 6, 2022
* Refactor get_tau_sigma to handle lists

* Fixed syntax error

* Black formatted

* Change assertions to ValueError raises

* Prior predictions constant data (#5723)

* support return constant_data with prior pred

* pre-commit format

* added test

* code review

* Fix issue probably-meant-fstring found at https://codereview.doctor (#5726)

* Add coords argument to pymc.set_data (#5588)


Co-authored-by: Oriol (ZBook) <[email protected]>

* remove MultinomialRV override

* ⬆️ UPGRADE: Autoupdate pre-commit config

* Group GaussianRandomWalk tests in single class

* Infer steps from shape in GaussianRandomWalk

* Unpin upper limit on numpydoc

Closes #5401

* ⬆️ UPGRADE: Autoupdate pre-commit config

* Standardize docstrings of input dists arguments and add warning about cloning

* Remove unnecessary tag in Simulator logp

* Replace deprecated tag.ignore_logprob

* Group compile_pymc tests in own class

* Remove remaining uses of default_updates in codebase

* Remove redundant/wrong docstrings from GaussianRandomWalk logp

* Add moment to GaussianRandomWalk and fix mu/sigma broadcasting bug

* Do not create temporary SymbolicDistribution just to retrieve number of RNGs needed

Reordered methods for consistency

* Move SymbolicDistribution docstring to body of class

* Refactor AR distribution

* Deprecates AR1 distribution
* Implements random and moment methods
* Batching works on the left as with other distributions

* Rename `pandas_to_array` to `convert_observed_data`

* Obtain step information from dims and observed

* Make AR steps extend shape beyond initial_dist

This is consistent with the meaning of steps in the GaussianRandomWalk and translates directly to the number of scan steps taken

Co-authored-by: TimOliverMaier <[email protected]>
Co-authored-by: code-review-doctor <[email protected]>
Co-authored-by: Somasree Majumder <[email protected]>
Co-authored-by: Oriol (ZBook) <[email protected]>
Co-authored-by: danhphan <[email protected]>
Co-authored-by: twiecki <[email protected]>
Co-authored-by: Ricardo <[email protected]>
Co-authored-by: Ravin Kumar <[email protected]>
Co-authored-by: Michael Osthege <[email protected]>
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