What's Changed
- fix: don't convert dense matrices to COO in feature_is_filtered validation by @nayib-jose-gloria in #1398
- approved schema by @brianraymor in #1399
- Created 7.0.0 draft by @brianraymor in #1400
- updated gene references by @brianraymor in #1401
- added cellosaurus ontology by @brianraymor in #1403
- Updated tissue_ontology_term_id and tissue_type by @brianraymor in #1404
- editorial by @brianraymor in #1406
- updated cell type by @brianraymor in #1408
- updated development stage by @brianraymor in #1409
- updated donor by @brianraymor in #1410
- updated ethnicity by @brianraymor in #1411
- updated sex by @brianraymor in #1412
- updated suspension_type by @brianraymor in #1413
- editorial by @brianraymor in #1414
- feat: bump gencode versions for schema 7.0.0 by @nayib-jose-gloria in #1421
- chore: CCIE-4984 conform to open sourcing guidelines by @wontonst in #1417
- fix: rename opensource files by @Bento007 in #1426
- fix: resolve parquet duplication of rows by @Bento007 in #1424
- fix: atac seq duplicate check by @Bento007 in #1427
- feat: update tissue_type and tissue_ontology_term_id, minus cell line changes by @joyceyan in #1430
- restore disease and tissue by @brianraymor in #1431
- fix: invalid gene check by @joyceyan in #1432
- feat: update development_stage_ontology_term_id and development_stage for 7.0 by @joyceyan in #1428
- fix: stricter control on sorting by @Bento007 in #1433
- fix: add na as valid for uberon organisms by @joyceyan in #1434
- feat: update cell_type and cell_type_ontology_term_id for 7.0 by @joyceyan in #1438
- feat: cellosaurus terms for tissue_ontology_term_id by @joyceyan in #1443
- fix: improve error handling for subprocess commands in atac_seq.py by @Bento007 in #1446
- feat: sex ontology term id changes for 7.0 by @joyceyan in #1444
- feat: fix cell type ontology term id by @joyceyan in #1445
- fix: dedupe error 13 by @Bento007 in #1447
- fix: pin duckdb version in requirements.txt by @Bento007 in #1450
- fix: decouple schema version from package version by @nayib-jose-gloria in #1453
- VC-3520 feat: schema 7.0 changes to suspension_type by @kliu-czi in #1454
- Jhilton/7ont updates 1402 by @jahilton in #1456
- Updated changelog by @brianraymor in #1457
- feat: update self-reported ethnicity for schema 7.0.0 by @Bento007 in #1452
- feat: add donor_id handling and validation rules for cell_line in schema and tests by @Bento007 in #1455
- editorial by @brianraymor in #1458
- Updated HANCESTRO reference by @brianraymor in #1459
- fix: VC 3520 by @kliu-czi in #1460
- feat: add forbidden values for donor_id and validation test for tissu… by @Bento007 in #1461
- Created 7.1.0 draft by @brianraymor in #1465
- feat: update schema version to 7.0.0 and bump COG to 1.9.0 by @Bento007 in #1466
- fix: ontology_bump skip to support '||' separator. by @Bento007 in #1467
- added genetic perturbations by @brianraymor in #1468
New Contributors
Full Changelog: v6.0.0...v7.0.0
Contributors
Bento007, wontonst, and 5 other contributors