25.0.0rc1
Pre-release
Pre-release
Highlights
- We are switching from semantic versioning (MAJOR.MINOR.PATCH) to calendar versioning (YEAR.MINOR.PATCH) to match the versioning of fMRIPrep.
- This release brings ASLPrep up to date with fMRIPrep version 25.0.0.
- We have replaced the weighted average method for multi-delay data with a two-compartment general kinetic model, which (1) should improve CBF and ATT estimation, (2) allows ASLPrep to process multi-delay PASL data, and (3) generates aBAT and aBV outputs.
- We changed the cost function for motion correction, which dramatically improves motion correction on multi-delay data when the contrast varies over delays.
What's Changed
🛠 Breaking Changes
🎉 Exciting New Features
- Scale M0 scans with short TRs according to Alsop 2015 by @tsalo in #532
- Use Gaussian interpolation for resampling tissue probability maps by @tsalo in #542
- Incorporate sliceband in oxford_asl call for multiband ASL by @tsalo in #548
- Add figure plotting brain mask by @tsalo in #547
🐛 Bug Fixes
- Add legend to figures by @tsalo in #482
- fix: Find aslrefs in precomputed derivatives, remove bad connection by @effigies in #518
- Add boilerplate elements to templates by @tsalo in #524
- FIX: Change MCFLIRT cost function to Mutual Information by @aptinis in #525
- Write out aslref CBF + ATT in minimal mode by @tsalo in #522
- Use node's working directory as output directory for BASIL by @tsalo in #552
- Allow duplicate keys in
get_sbrefsby @tsalo in #555 - Apply MCFLIRT to register m0scan to aslref image by @tsalo in #553
- Resample M0 scan to ASL resolution by @tsalo in #556
Other Changes
- Fix spelling errors in code by @tsalo in #488
- Bring ASLPrep in line with fMRIPrep 25.0.0 by @tsalo in #510
- Remove dummy scan-related code by @tsalo in #526
- chore: Replace niworkflows reporting tools with nireports by @effigies in #527
- Calculate the components of QEI independently for group reports by @mattcieslak in #523
- rf: Split fieldmap registration into its own fit step by @effigies in #531
- Speed up integration tests by @tsalo in #535
- Clarify cli help messages by @tientong98 in #533
- Speed up FreeSurfer BBR in the CI tests by @mattcieslak in #543
- Replace BOLD and EPI with ASL in code by @tsalo in #537
- Fix typos in documentation and add page on BIDS curation by @B-Sevchik in #529
- Fix typos in report specifications by @tsalo in #554
- Add new contributors and available ORCIDs to CITATION.cff by @tsalo in #559
New Contributors
- @effigies made their first contribution in #518
- @aptinis made their first contribution in #525
- @tientong98 made their first contribution in #533
- @B-Sevchik made their first contribution in #529
Full Changelog: 0.7.5...25.0.0rc1
Contributors
effigies, mattcieslak, and 4 other contributors